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Nucleic acid secondary structure
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11	Abstract Characterising RNA Secondary Structure Space: With the advent of next-generation sequencing technologies and new methods in transcriptomics, an explosively growing amount of biological RNA data is available in p Add to Reading List Source URL: birc.au.dk Language: English - Date: 2012-09-17 05:05:30 Biochemistry Nucleic acid sequence Biomolecular structure Protein structure prediction RNA Biology Genetics
12	Biochemistry (Moscow), Vol. 60, No. 8, 1995 GeneBee-NET: Internet-Based Server for Analyzing Biopolymers Structure L. I. Brodsky,1,2 V. V. Ivanov,1 Ya. L. Kalaydzidis,3 A. M. Leontovich,3 V. K. Nikolaev,1 S. I. Feranch Add to Reading List Source URL: www.genebee.msu.su Language: English - Date: 2001-10-11 03:08:30 Computational science Sequence alignment Multiple sequence alignment Nucleic acid sequence Protein secondary structure Smith–Waterman algorithm Position-specific scoring matrix Structural alignment Substitution matrix Bioinformatics Computational phylogenetics Science
13	Ribosomal RNA Secondary Structure: Compensatory Mutations and Implications for Phylogenetic Analysis ’ Michael T. Dixon and David M. Hillis Department of Zoology, The University of Texas at Austin Add to Reading List Source URL: www.zo.utexas.edu Language: English - Date: 2013-04-22 17:48:31 Phylogenetics RNA Computational phylogenetics Stem-loop Molecular phylogenetics Maximum parsimony Ribosomal RNA Nucleic acid sequence 18S ribosomal RNA Genetics Biology Philosophy of biology
14	RNA: the unknotted strand of life No knots in known RNA structures February 3, 2015 Add to Reading List Source URL: www.sissa.it Language: English - Date: 2015-02-03 04:50:16 Molecular biology LSm DNA Gene Nucleic acid secondary structure Biology Genetics RNA
15	Software News and Updates NUPACK: Analysis and Design of Nucleic Acid Systems JOSEPH N. ZADEH,1† CONRAD D. STEENBERG,1† JUSTIN S. BOIS,1† BRIAN R. WOLFE,1† MARSHALL B. PIERCE,1 ASIF R. KHAN,1 ROBERT M. DIRKS,1 NI Add to Reading List Source URL: web.caltech.edu Language: English - Date: 2011-01-10 13:21:29 DNA NUPACK Biophysics Molecular biology Nucleic acid secondary structure Nucleic acid Base pair Gene Pseudoknot Biology Genetics RNA
16	Supplementary Material: A Partition Function Algorithm for Nucleic Acid Secondary Structure Including Pseudoknots ROBERT M. DIRKS1 , NILES A. PIERCE2 1 2 Add to Reading List Source URL: piercelab.caltech.edu Language: English - Date: 2010-09-08 02:56:23 Spliceosome Pseudoknot Biology LSm Proteins
17	A Partition Function Algorithm for Nucleic Acid Secondary Structure Including Pseudoknots ROBERT M. DIRKS,1 NILES A. PIERCE2 1 Department of Chemistry, California Institute of Technology, Pasadena, California 91125 Add to Reading List Source URL: piercelab.caltech.edu Language: English - Date: 2010-09-08 02:56:26 RNA Computing Mathematical logic Theoretical computer science Recursion Pseudoknot Dynamic programming Nucleic acid secondary structure Algorithm Computer programming Mathematics Programming idioms
18	An Algorithm for Computing Nucleic Acid Base-Pairing Probabilities Including Pseudoknots ROBERT M. DIRKS,1 NILES A. PIERCE2 1 Department of Chemistry, California Institute of Technology, Pasadena, California 91125 Add to Reading List Source URL: piercelab.caltech.edu Language: English - Date: 2010-09-08 02:56:26 Biology Genetics Pseudoknot Nucleic acid secondary structure Dynamic programming NUPACK Partition Algorithm Recursion Mathematics RNA Mathematical logic
19	Article No. jmbi[removed]available online at http://www.idealibrary.com on J. Mol. Biol[removed], 2053±2068 A Dynamic Programming Algorithm for RNA Structure Prediction Including Pseudoknots Add to Reading List Source URL: www.tcoffee.org Language: English - Date: 2013-09-14 16:24:48 Pseudoknot Nucleic acid structure prediction Stem-loop Dynamic programming Ribosome Algorithm Ribozyme Nucleic acid tertiary structure Nucleic acid secondary structure RNA Genetics Biology
20	© 2004 Nature Publishing Group http://www.nature.com/naturebiotechnology _computational BIOLOGY PRIMER Add to Reading List Source URL: www.tcoffee.org Language: English - Date: 2013-09-14 16:24:48 Philosophy of biology Stem-loop Pseudoknot Base pair Gene Algorithm Nucleic acid secondary structure Structural alignment Biology RNA Genetics

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